Monte Carlo Sampling Distribution of Indirect Effect Centrality Over a Specific Time Interval or a Range of Time Intervals

This function generates a Monte Carlo method sampling distribution of the indirect effect centrality at a particular time interval \(\Delta t\) using the first-order stochastic differential equation model drift matrix \(\boldsymbol{\Phi}\).

Usage

MCIndirectCentral(
  phi,
  vcov_phi_vec,
  delta_t,
  R,
  test_phi = TRUE,
  ncores = NULL,
  seed = NULL
)

Arguments

phi

Numeric matrix. The drift matrix (\(\boldsymbol{\Phi}\)). phi should have row and column names pertaining to the variables in the system.

vcov_phi_vec

Numeric matrix. The sampling variance-covariance matrix of \(\mathrm{vec} \left( \boldsymbol{\Phi} \right)\).

delta_t

Numeric. Time interval (\(\Delta t\)).

R

Positive integer. Number of replications.

test_phi

Logical. If test_phi = TRUE, the function tests the stability of the generated drift matrix \(\boldsymbol{\Phi}\). If the test returns FALSE, the function generates a new drift matrix \(\boldsymbol{\Phi}\) and runs the test recursively until the test returns TRUE.

ncores

Positive integer. Number of cores to use. If ncores = NULL, use a single core. Consider using multiple cores when number of replications R is a large value.

seed

Random seed.

Value

Returns an object of class ctmedmc which is a list with the following elements:

call

Function call.

args

Function arguments.

fun

Function used ("MCIndirectCentral").

output

A list the length of which is equal to the length of delta_t.

Each element in the output list has the following elements:

est

A vector of indirect effect centrality.

thetahatstar

A matrix of Monte Carlo indirect effect centrality.

Details

See IndirectCentral() for more details.

Monte Carlo Method

Let \(\boldsymbol{\theta}\) be \(\mathrm{vec} \left( \boldsymbol{\Phi} \right)\), that is, the elements of the \(\boldsymbol{\Phi}\) matrix in vector form sorted column-wise. Let \(\hat{\boldsymbol{\theta}}\) be \(\mathrm{vec} \left( \hat{\boldsymbol{\Phi}} \right)\). Based on the asymptotic properties of maximum likelihood estimators, we can assume that estimators are normally distributed around the population parameters. $$ \hat{\boldsymbol{\theta}} \sim \mathcal{N} \left( \boldsymbol{\theta}, \mathbb{V} \left( \hat{\boldsymbol{\theta}} \right) \right) $$ Using this distributional assumption, a sampling distribution of \(\hat{\boldsymbol{\theta}}\) which we refer to as \(\hat{\boldsymbol{\theta}}^{\ast}\) can be generated by replacing the population parameters with sample estimates, that is, $$ \hat{\boldsymbol{\theta}}^{\ast} \sim \mathcal{N} \left( \hat{\boldsymbol{\theta}}, \hat{\mathbb{V}} \left( \hat{\boldsymbol{\theta}} \right) \right) . $$ Let \(\mathbf{g} \left( \hat{\boldsymbol{\theta}} \right)\) be a parameter that is a function of the estimated parameters. A sampling distribution of \(\mathbf{g} \left( \hat{\boldsymbol{\theta}} \right)\) , which we refer to as \(\mathbf{g} \left( \hat{\boldsymbol{\theta}}^{\ast} \right)\) , can be generated by using the simulated estimates to calculate \(\mathbf{g}\). The standard deviations of the simulated estimates are the standard errors. Percentiles corresponding to \(100 \left( 1 - \alpha \right) \%\) are the confidence intervals.

References

Bollen, K. A. (1987). Total, direct, and indirect effects in structural equation models. Sociological Methodology, 17, 37. doi:10.2307/271028

Deboeck, P. R., & Preacher, K. J. (2015). No need to be discrete: A method for continuous time mediation analysis. Structural Equation Modeling: A Multidisciplinary Journal, 23 (1), 61–75. doi:10.1080/10705511.2014.973960

Ryan, O., & Hamaker, E. L. (2021). Time to intervene: A continuous-time approach to network analysis and centrality. Psychometrika, 87 (1), 214–252. doi:10.1007/s11336-021-09767-0

See also

Other Continuous Time Mediation Functions: DeltaBeta(), DeltaIndirectCentral(), DeltaMed(), DeltaTotalCentral(), Direct(), Indirect(), IndirectCentral(), MCBeta(), MCMed(), MCPhi(), MCTotalCentral(), Med(), PosteriorBeta(), PosteriorIndirectCentral(), PosteriorMed(), PosteriorPhi(), PosteriorTotalCentral(), Total(), TotalCentral(), Trajectory()

Author

Ivan Jacob Agaloos Pesigan

Examples

set.seed(42)
phi <- matrix(
  data = c(
    -0.357, 0.771, -0.450,
    0.0, -0.511, 0.729,
    0, 0, -0.693
  ),
  nrow = 3
)
colnames(phi) <- rownames(phi) <- c("x", "m", "y")
vcov_phi_vec <- matrix(
  data = c(
    0.002704274, -0.001475275, 0.000949122,
    -0.001619422, 0.000885122, -0.000569404,
    0.00085493, -0.000465824, 0.000297815,
    -0.001475275, 0.004428442, -0.002642303,
    0.000980573, -0.00271817, 0.001618805,
    -0.000586921, 0.001478421, -0.000871547,
    0.000949122, -0.002642303, 0.006402668,
    -0.000697798, 0.001813471, -0.004043138,
    0.000463086, -0.001120949, 0.002271711,
    -0.001619422, 0.000980573, -0.000697798,
    0.002079286, -0.001152501, 0.000753,
    -0.001528701, 0.000820587, -0.000517524,
    0.000885122, -0.00271817, 0.001813471,
    -0.001152501, 0.00342605, -0.002075005,
    0.000899165, -0.002532849, 0.001475579,
    -0.000569404, 0.001618805, -0.004043138,
    0.000753, -0.002075005, 0.004984032,
    -0.000622255, 0.001634917, -0.003705661,
    0.00085493, -0.000586921, 0.000463086,
    -0.001528701, 0.000899165, -0.000622255,
    0.002060076, -0.001096684, 0.000686386,
    -0.000465824, 0.001478421, -0.001120949,
    0.000820587, -0.002532849, 0.001634917,
    -0.001096684, 0.003328692, -0.001926088,
    0.000297815, -0.000871547, 0.002271711,
    -0.000517524, 0.001475579, -0.003705661,
    0.000686386, -0.001926088, 0.004726235
  ),
  nrow = 9
)

# Specific time interval ----------------------------------------------------
MCIndirectCentral(
  phi = phi,
  vcov_phi_vec = vcov_phi_vec,
  delta_t = 1,
  R = 100L # use a large value for R in actual research
)
#> 
#> Indirect Effect Centrality
#> 
#> $`1`
#>   interval    est     se   R    2.5%  97.5%
#> x        1 0.0000 0.0129 100 -0.0283 0.0230
#> m        1 0.1674 0.0200 100  0.1277 0.2001
#> y        1 0.0000 0.0116 100 -0.0192 0.0243
#> 

# Range of time intervals ---------------------------------------------------
mc <- MCIndirectCentral(
  phi = phi,
  vcov_phi_vec = vcov_phi_vec,
  delta_t = 1:5,
  R = 100L # use a large value for R in actual research
)
plot(mc)




# Methods -------------------------------------------------------------------
# MCIndirectCentral has a number of methods including
# print, summary, confint, and plot
print(mc)
#> 
#> Indirect Effect Centrality
#> 
#> $`1`
#>   interval    est     se   R    2.5%  97.5%
#> x        1 0.0000 0.0105 100 -0.0195 0.0204
#> m        1 0.1674 0.0200 100  0.1239 0.1993
#> y        1 0.0000 0.0096 100 -0.0175 0.0174
#> 
#> $`2`
#>   interval    est     se   R    2.5%  97.5%
#> x        2 0.0000 0.0208 100 -0.0383 0.0401
#> m        2 0.4008 0.0411 100  0.3091 0.4667
#> y        2 0.0000 0.0189 100 -0.0345 0.0337
#> 
#> $`3`
#>   interval    est     se   R    2.5%  97.5%
#> x        3 0.0000 0.0259 100 -0.0462 0.0499
#> m        3 0.5423 0.0522 100  0.4356 0.6286
#> y        3 0.0000 0.0261 100 -0.0469 0.0489
#> 
#> $`4`
#>   interval    est     se   R    2.5%  97.5%
#> x        4 0.0000 0.0287 100 -0.0500 0.0569
#> m        4 0.5823 0.0574 100  0.4657 0.6885
#> y        4 0.0000 0.0348 100 -0.0598 0.0614
#> 
#> $`5`
#>   interval    est     se   R    2.5%  97.5%
#> x        5 0.0000 0.0308 100 -0.0558 0.0618
#> m        5 0.5521 0.0595 100  0.4406 0.6662
#> y        5 0.0000 0.0435 100 -0.0737 0.0752
#> 
summary(mc)
#>    variable interval           est          se   R        2.5%      97.5%
#> 1         x        1  0.000000e+00 0.010488048 100 -0.01945724 0.02036598
#> 2         m        1  1.674155e-01 0.020029011 100  0.12393999 0.19929957
#> 3         y        1  0.000000e+00 0.009642906 100 -0.01749498 0.01742023
#> 4         x        2  0.000000e+00 0.020833467 100 -0.03826460 0.04008505
#> 5         m        2  4.008043e-01 0.041083511 100  0.30905795 0.46665886
#> 6         y        2  0.000000e+00 0.018853593 100 -0.03451810 0.03366545
#> 7         x        3  0.000000e+00 0.025852025 100 -0.04623497 0.04986494
#> 8         m        3  5.422564e-01 0.052168884 100  0.43556642 0.62860175
#> 9         y        3 -3.330669e-16 0.026088495 100 -0.04685600 0.04885874
#> 10        x        4  0.000000e+00 0.028727769 100 -0.05004759 0.05693784
#> 11        m        4  5.823179e-01 0.057429611 100  0.46567310 0.68846611
#> 12        y        4  0.000000e+00 0.034803457 100 -0.05977013 0.06135999
#> 13        x        5  0.000000e+00 0.030835069 100 -0.05577598 0.06183490
#> 14        m        5  5.520985e-01 0.059511667 100  0.44063183 0.66624186
#> 15        y        5  0.000000e+00 0.043504913 100 -0.07366080 0.07515086
confint(mc, level = 0.95)
#>    variable interval       2.5 %     97.5 %
#> 1         x        1 -0.01945724 0.02036598
#> 2         m        1  0.12393999 0.19929957
#> 3         y        1 -0.01749498 0.01742023
#> 4         x        2 -0.03826460 0.04008505
#> 5         m        2  0.30905795 0.46665886
#> 6         y        2 -0.03451810 0.03366545
#> 7         x        3 -0.04623497 0.04986494
#> 8         m        3  0.43556642 0.62860175
#> 9         y        3 -0.04685600 0.04885874
#> 10        x        4 -0.05004759 0.05693784
#> 11        m        4  0.46567310 0.68846611
#> 12        y        4 -0.05977013 0.06135999
#> 13        x        5 -0.05577598 0.06183490
#> 14        m        5  0.44063183 0.66624186
#> 15        y        5 -0.07366080 0.07515086
plot(mc)