Session
sessionInfo()
#> R version 4.5.1 (2025-06-13)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.2 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] metaVAR_0.0.0.9000 fitDTVARMx_0.0.0.9000 OpenMx_2.22.7
#> [4] simStateSpace_1.2.11
#>
#> loaded via a namespace (and not attached):
#> [1] digest_0.6.37 xfun_0.52 Matrix_1.7-3
#> [4] lattice_0.22-7 glue_1.8.0 knitr_1.50
#> [7] parallel_4.5.1 RcppParallel_5.1.10 lifecycle_1.0.4
#> [10] cli_3.6.5.9000 rProject_0.0.21 grid_4.5.1
#> [13] compiler_4.5.1 tools_4.5.1 evaluate_1.0.4
#> [16] Rcpp_1.1.0 rlang_1.1.6 MASS_7.3-65
Packages
installed.packages()[, c("Package", "Version")]
#> Package Version
#> fitDTVARMx "fitDTVARMx" "0.0.0.9000"
#> metaVAR "metaVAR" "0.0.0.9000"
#> abind "abind" "1.4-8"
#> Amelia "Amelia" "1.8.3"
#> arm "arm" "1.14-4"
#> arrow "arrow" "21.0.0"
#> ash "ash" "1.0-15"
#> askpass "askpass" "1.2.1"
#> assertthat "assertthat" "0.2.1"
#> backports "backports" "1.5.0"
#> base64enc "base64enc" "0.1-3"
#> betaDelta "betaDelta" "1.0.6"
#> betaMC "betaMC" "1.3.3"
#> betaNB "betaNB" "1.0.6"
#> betaSandwich "betaSandwich" "1.0.8"
#> BH "BH" "1.87.0-1"
#> bibtex "bibtex" "0.5.1"
#> BiocManager "BiocManager" "1.30.26"
#> bit "bit" "4.6.0"
#> bit64 "bit64" "4.6.0-1"
#> bitops "bitops" "1.0-9"
#> blob "blob" "1.2.4"
#> bootStateSpace "bootStateSpace" "1.0.2"
#> brew "brew" "1.0-10"
#> brio "brio" "1.1.5"
#> broom "broom" "1.0.9"
#> bslib "bslib" "0.9.0"
#> cachem "cachem" "1.1.0"
#> callr "callr" "3.7.6"
#> car "car" "3.1-3"
#> caracas "caracas" "2.1.1"
#> carData "carData" "3.0-5"
#> cellranger "cellranger" "1.1.0"
#> cffr "cffr" "1.2.0"
#> checkmate "checkmate" "2.3.2"
#> cli "cli" "3.6.5.9000"
#> clipr "clipr" "0.8.0"
#> clock "clock" "0.7.3"
#> clusterGeneration "clusterGeneration" "1.3.8"
#> coda "coda" "0.19-4.1"
#> cOde "cOde" "1.1.1"
#> collections "collections" "0.3.8"
#> colorspace "colorspace" "2.1-1"
#> commonmark "commonmark" "2.0.0"
#> conflicted "conflicted" "1.2.0"
#> corpcor "corpcor" "1.6.10"
#> covr "covr" "3.6.4"
#> cowplot "cowplot" "1.2.0"
#> cpp11 "cpp11" "0.5.2"
#> crayon "crayon" "1.5.3"
#> credentials "credentials" "2.0.2"
#> crosstalk "crosstalk" "1.2.1"
#> cTMed "cTMed" "1.0.6.9000"
#> ctsem "ctsem" "3.10.4"
#> curl "curl" "6.4.0"
#> data.table "data.table" "1.17.8"
#> DBI "DBI" "1.2.3"
#> dbplyr "dbplyr" "2.5.0"
#> Deriv "Deriv" "4.2.0"
#> desc "desc" "1.4.3"
#> deSolve "deSolve" "1.40"
#> devtools "devtools" "2.4.5.9000"
#> diagram "diagram" "1.6.5"
#> dials "dials" "1.4.1"
#> DiceDesign "DiceDesign" "1.10"
#> diffobj "diffobj" "0.3.6"
#> digest "digest" "0.6.37"
#> distributional "distributional" "0.5.0"
#> distro "distro" "0.1.0"
#> doBy "doBy" "4.7.0"
#> docopt "docopt" "0.7.2"
#> doFuture "doFuture" "1.1.2"
#> downlit "downlit" "0.4.4"
#> dplyr "dplyr" "1.1.4"
#> DT "DT" "0.33"
#> dtplyr "dtplyr" "1.3.1"
#> duckdb "duckdb" "1.3.2"
#> dynr "dynr" "0.1.16-112"
#> dynUtils "dynUtils" "0.9.1"
#> ellipse "ellipse" "0.5.0"
#> ellipsis "ellipsis" "0.3.2"
#> evaluate "evaluate" "1.0.4"
#> expm "expm" "1.0-0"
#> fansi "fansi" "1.0.6"
#> farver "farver" "2.1.2"
#> fastDummies "fastDummies" "1.7.5"
#> fastmap "fastmap" "1.2.0"
#> fclust "fclust" "2.1.2"
#> fda "fda" "6.3.0"
#> fdrtool "fdrtool" "1.2.18"
#> fds "fds" "1.8"
#> fitDTVARMx "fitDTVARMx" "0.0.0.9000"
#> FNN "FNN" "1.1.4.1"
#> fontawesome "fontawesome" "0.5.3"
#> forcats "forcats" "1.0.0"
#> foreach "foreach" "1.5.2"
#> Formula "Formula" "1.2-5"
#> fs "fs" "1.6.6"
#> fst "fst" "0.9.8"
#> fstcore "fstcore" "0.10.0"
#> furrr "furrr" "0.3.1"
#> future "future" "1.67.0"
#> future.apply "future.apply" "1.20.0"
#> gargle "gargle" "1.5.2"
#> generics "generics" "0.1.4"
#> gert "gert" "2.1.5"
#> ggplot2 "ggplot2" "3.5.2"
#> ggrepel "ggrepel" "0.9.6"
#> gh "gh" "1.5.0"
#> gitcreds "gitcreds" "0.1.2"
#> glasso "glasso" "1.11"
#> glmnet "glmnet" "4.1-10"
#> globals "globals" "0.18.0"
#> glue "glue" "1.8.0"
#> googledrive "googledrive" "2.1.1"
#> googlesheets4 "googlesheets4" "1.1.1"
#> gower "gower" "1.0.2"
#> GPArotation "GPArotation" "2025.3-1"
#> GPfit "GPfit" "1.0-9"
#> graphicalVAR "graphicalVAR" "0.3.4"
#> gridExtra "gridExtra" "2.3"
#> gsubfn "gsubfn" "0.7"
#> gtable "gtable" "0.3.6"
#> gtools "gtools" "3.9.5"
#> hardhat "hardhat" "1.4.1"
#> haven "haven" "2.5.5"
#> hdrcde "hdrcde" "3.4"
#> here "here" "1.0.1"
#> highr "highr" "0.11"
#> Hmisc "Hmisc" "5.2-3"
#> hms "hms" "1.1.3"
#> htmlTable "htmlTable" "2.4.3"
#> htmltools "htmltools" "0.5.8.1"
#> htmlwidgets "htmlwidgets" "1.6.4"
#> httpuv "httpuv" "1.6.16"
#> httr "httr" "1.4.7"
#> httr2 "httr2" "1.2.1"
#> ids "ids" "1.0.1"
#> ifaTools "ifaTools" "0.23"
#> igraph "igraph" "2.1.4"
#> infer "infer" "1.0.9"
#> ini "ini" "0.3.1"
#> inline "inline" "0.3.21"
#> ipred "ipred" "0.9-15"
#> isoband "isoband" "0.2.7"
#> iterators "iterators" "1.0.14"
#> jomo "jomo" "2.7-6"
#> jpeg "jpeg" "0.1-11"
#> jquerylib "jquerylib" "0.1.4"
#> jsonlite "jsonlite" "2.0.0"
#> jsonvalidate "jsonvalidate" "1.5.0"
#> kernlab "kernlab" "0.9-33"
#> knitr "knitr" "1.50"
#> ks "ks" "1.15.1"
#> labeling "labeling" "0.4.3"
#> Lahman "Lahman" "12.0-0"
#> languageserver "languageserver" "0.3.16"
#> later "later" "1.4.2"
#> latex2exp "latex2exp" "0.9.6"
#> lava "lava" "1.8.1"
#> lavaan "lavaan" "0.6-19"
#> lazyeval "lazyeval" "0.2.2"
#> lhs "lhs" "1.2.0"
#> lifecycle "lifecycle" "1.0.4"
#> lintr "lintr" "3.2.0"
#> listenv "listenv" "0.9.1"
#> litedown "litedown" "0.7"
#> littler "littler" "0.3.21"
#> lme4 "lme4" "1.1-37"
#> locfit "locfit" "1.5-9.12"
#> longMI "longMI" "1.0.0"
#> loo "loo" "2.8.0"
#> lubridate "lubridate" "1.9.4"
#> magick "magick" "2.8.7"
#> magrittr "magrittr" "2.0.3"
#> markdown "markdown" "2.0"
#> MatrixModels "MatrixModels" "0.5-4"
#> matrixStats "matrixStats" "1.5.0"
#> mclust "mclust" "6.1.1"
#> memoise "memoise" "2.0.1"
#> metaSEM "metaSEM" "1.5.0"
#> metaVAR "metaVAR" "0.0.0.9000"
#> mice "mice" "3.18.0"
#> microbenchmark "microbenchmark" "1.5.0"
#> mime "mime" "0.13"
#> miniUI "miniUI" "0.1.2"
#> minqa "minqa" "1.2.8"
#> mitml "mitml" "0.4-5"
#> mize "mize" "0.2.4"
#> mlVAR "mlVAR" "0.5.2"
#> mnormt "mnormt" "2.1.1"
#> modeldata "modeldata" "1.5.0"
#> modelenv "modelenv" "0.2.0"
#> modelr "modelr" "0.1.11"
#> MplusAutomation "MplusAutomation" "1.1.1"
#> multicool "multicool" "1.0.1"
#> mvtnorm "mvtnorm" "1.3-3"
#> nloptr "nloptr" "2.2.1"
#> numDeriv "numDeriv" "2016.8-1.1"
#> nycflights13 "nycflights13" "1.0.2"
#> OpenMx "OpenMx" "2.22.7"
#> openssl "openssl" "2.3.3"
#> ordinal "ordinal" "2023.12-4.1"
#> pan "pan" "1.9"
#> pander "pander" "0.6.6"
#> parallelly "parallelly" "1.45.1"
#> parsnip "parsnip" "1.3.2"
#> patchwork "patchwork" "1.3.1"
#> pbapply "pbapply" "1.7-4"
#> pbivnorm "pbivnorm" "0.6.0"
#> pbkrtest "pbkrtest" "0.5.5"
#> pcaPP "pcaPP" "2.0-5"
#> pdftools "pdftools" "3.5.0"
#> pillar "pillar" "1.11.0"
#> pkgbuild "pkgbuild" "1.4.8"
#> pkgconfig "pkgconfig" "2.0.3"
#> pkgdown "pkgdown" "2.1.3"
#> pkgload "pkgload" "1.4.0"
#> plogr "plogr" "0.2.0"
#> plyr "plyr" "1.8.9"
#> png "png" "0.1-8"
#> posterior "posterior" "1.6.1"
#> pracma "pracma" "2.4.4"
#> praise "praise" "1.0.0"
#> prettyunits "prettyunits" "1.2.0"
#> printr "printr" "0.3"
#> processx "processx" "3.8.6"
#> prodlim "prodlim" "2025.04.28"
#> profvis "profvis" "0.4.0"
#> progress "progress" "1.2.3"
#> progressr "progressr" "0.15.1"
#> promises "promises" "1.3.3"
#> proto "proto" "1.0.0"
#> ps "ps" "1.9.1"
#> psych "psych" "2.5.6"
#> purrr "purrr" "1.1.0"
#> qgraph "qgraph" "1.9.8"
#> qpdf "qpdf" "1.4.1"
#> quadprog "quadprog" "1.5-8"
#> quantreg "quantreg" "6.1"
#> quarto "quarto" "1.5.0"
#> QuickJSR "QuickJSR" "1.8.0"
#> R.cache "R.cache" "0.17.0"
#> R.methodsS3 "R.methodsS3" "1.8.2"
#> R.oo "R.oo" "1.27.1"
#> R.utils "R.utils" "2.13.0"
#> R2jags "R2jags" "0.8-9"
#> R2WinBUGS "R2WinBUGS" "2.1-23"
#> R6 "R6" "2.6.1"
#> ragg "ragg" "1.4.0"
#> rainbow "rainbow" "3.8"
#> rappdirs "rappdirs" "0.3.3"
#> rbibutils "rbibutils" "2.3"
#> rcmdcheck "rcmdcheck" "1.4.0"
#> RColorBrewer "RColorBrewer" "1.1-3"
#> Rcpp "Rcpp" "1.1.0"
#> RcppArmadillo "RcppArmadillo" "14.6.0-1"
#> RcppEigen "RcppEigen" "0.3.4.0.2"
#> RcppGSL "RcppGSL" "0.3.13"
#> RcppParallel "RcppParallel" "5.1.10"
#> RcppTOML "RcppTOML" "0.2.3"
#> RCurl "RCurl" "1.98-1.17"
#> Rdpack "Rdpack" "2.6.4"
#> readr "readr" "2.1.5"
#> readxl "readxl" "1.4.5"
#> recipes "recipes" "1.3.1"
#> RefManageR "RefManageR" "1.4.0"
#> reformulas "reformulas" "0.4.1"
#> rematch "rematch" "2.0.0"
#> rematch2 "rematch2" "2.1.2"
#> remotes "remotes" "2.5.0"
#> reprex "reprex" "2.1.1"
#> reshape2 "reshape2" "1.4.4"
#> reticulate "reticulate" "1.43.0"
#> rex "rex" "1.2.1"
#> rhub "rhub" "2.0.1"
#> rjags "rjags" "4-17"
#> rlang "rlang" "1.1.6"
#> RMariaDB "RMariaDB" "1.3.4"
#> rmarkdown "rmarkdown" "2.29"
#> roxygen2 "roxygen2" "7.3.2"
#> rpf "rpf" "1.0.15"
#> RPostgres "RPostgres" "1.4.8"
#> rProject "rProject" "0.0.21"
#> rprojroot "rprojroot" "2.1.0"
#> rsample "rsample" "1.3.1"
#> RSQLite "RSQLite" "2.4.2"
#> rstan "rstan" "2.32.7"
#> rstantools "rstantools" "2.4.0"
#> rstudioapi "rstudioapi" "0.17.1"
#> rversions "rversions" "2.1.2"
#> rvest "rvest" "1.0.4"
#> Ryacas "Ryacas" "1.1.5"
#> sass "sass" "0.4.10"
#> scales "scales" "1.4.0"
#> selectr "selectr" "0.4-2"
#> semlbci "semlbci" "0.11.3"
#> semmcci "semmcci" "1.1.5"
#> sessioninfo "sessioninfo" "1.2.3"
#> sfd "sfd" "0.1.0"
#> shape "shape" "1.4.6.1"
#> shiny "shiny" "1.11.1"
#> simStateSpace "simStateSpace" "1.2.11"
#> slider "slider" "0.3.2"
#> snow "snow" "0.4-4"
#> snowfall "snowfall" "1.84-6.3"
#> sourcetools "sourcetools" "0.1.7-1"
#> SparseM "SparseM" "1.84-2"
#> sparsevctrs "sparsevctrs" "0.3.4"
#> SQUAREM "SQUAREM" "2021.1"
#> StanHeaders "StanHeaders" "2.32.10"
#> stringi "stringi" "1.8.7"
#> stringr "stringr" "1.5.1"
#> styler "styler" "1.10.3"
#> symSEM "symSEM" "0.4"
#> sys "sys" "3.4.3"
#> systemfonts "systemfonts" "1.2.3"
#> tensorA "tensorA" "0.36.2.1"
#> testthat "testthat" "3.2.3.9000"
#> texreg "texreg" "1.39.4"
#> textshaping "textshaping" "1.0.1"
#> tibble "tibble" "3.3.0"
#> tidymodels "tidymodels" "1.3.0"
#> tidyr "tidyr" "1.3.1"
#> tidyselect "tidyselect" "1.2.1"
#> tidyverse "tidyverse" "2.0.0"
#> timechange "timechange" "0.3.0"
#> timeDate "timeDate" "4041.110"
#> tinytex "tinytex" "0.57"
#> tune "tune" "1.3.0"
#> tzdb "tzdb" "0.5.0"
#> ucminf "ucminf" "1.2.2"
#> urlchecker "urlchecker" "1.0.1"
#> usethis "usethis" "3.1.0"
#> utf8 "utf8" "1.2.6"
#> uuid "uuid" "1.2-1"
#> V8 "V8" "6.0.5"
#> vctrs "vctrs" "0.6.5"
#> viridis "viridis" "0.6.5"
#> viridisLite "viridisLite" "0.4.2"
#> vroom "vroom" "1.6.5"
#> waldo "waldo" "0.6.2"
#> warp "warp" "0.2.1"
#> whisker "whisker" "0.4.1"
#> whoami "whoami" "1.3.0"
#> withr "withr" "3.0.2"
#> workflows "workflows" "1.2.0"
#> workflowsets "workflowsets" "1.1.1"
#> xfun "xfun" "0.52"
#> xml2 "xml2" "1.3.8"
#> xmlparsedata "xmlparsedata" "1.0.5"
#> xopen "xopen" "1.0.1"
#> xtable "xtable" "1.8-4"
#> yaml "yaml" "2.3.10"
#> yardstick "yardstick" "1.3.2"
#> zip "zip" "2.3.3"
#> base "base" "4.5.1"
#> boot "boot" "1.3-31"
#> class "class" "7.3-23"
#> cluster "cluster" "2.1.8.1"
#> codetools "codetools" "0.2-20"
#> compiler "compiler" "4.5.1"
#> datasets "datasets" "4.5.1"
#> foreign "foreign" "0.8-90"
#> graphics "graphics" "4.5.1"
#> grDevices "grDevices" "4.5.1"
#> grid "grid" "4.5.1"
#> KernSmooth "KernSmooth" "2.23-26"
#> lattice "lattice" "0.22-7"
#> MASS "MASS" "7.3-65"
#> Matrix "Matrix" "1.7-3"
#> methods "methods" "4.5.1"
#> mgcv "mgcv" "1.9-3"
#> nlme "nlme" "3.1-168"
#> nnet "nnet" "7.3-20"
#> parallel "parallel" "4.5.1"
#> rpart "rpart" "4.1.24"
#> spatial "spatial" "7.3-18"
#> splines "splines" "4.5.1"
#> stats "stats" "4.5.1"
#> stats4 "stats4" "4.5.1"
#> survival "survival" "3.8-3"
#> tcltk "tcltk" "4.5.1"
#> tools "tools" "4.5.1"
#> utils "utils" "4.5.1"
CPU
#> Architecture: x86_64
#> CPU op-mode(s): 32-bit, 64-bit
#> Address sizes: 48 bits physical, 48 bits virtual
#> Byte Order: Little Endian
#> CPU(s): 32
#> On-line CPU(s) list: 0-31
#> Vendor ID: AuthenticAMD
#> Model name: AMD Ryzen 9 9955HX 16-Core Processor
#> CPU family: 26
#> Model: 68
#> Thread(s) per core: 2
#> Core(s) per socket: 16
#> Socket(s): 1
#> Stepping: 0
#> Frequency boost: enabled
#> CPU(s) scaling MHz: 46%
#> CPU max MHz: 5058.0000
#> CPU min MHz: 600.0000
#> BogoMIPS: 4990.57
#> Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good amd_lbr_v2 nopl xtopology nonstop_tsc cpuid extd_apicid aperfmperf rapl pni pclmulqdq monitor ssse3 fma cx16 sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt tce topoext perfctr_core perfctr_nb bpext perfctr_llc mwaitx cpb cat_l3 cdp_l3 hw_pstate ssbd mba perfmon_v2 ibrs ibpb stibp ibrs_enhanced vmmcall fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm rdt_a avx512f avx512dq rdseed adx smap avx512ifma clflushopt clwb avx512cd sha_ni avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local user_shstk avx_vnni avx512_bf16 clzero irperf xsaveerptr rdpru wbnoinvd cppc arat npt lbrv svm_lock nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload vgif x2avic v_spec_ctrl vnmi avx512vbmi umip pku ospke avx512_vbmi2 gfni vaes vpclmulqdq avx512_vnni avx512_bitalg avx512_vpopcntdq rdpid bus_lock_detect movdiri movdir64b overflow_recov succor smca fsrm avx512_vp2intersect flush_l1d amd_lbr_pmc_freeze
#> Virtualization: AMD-V
#> L1d cache: 768 KiB (16 instances)
#> L1i cache: 512 KiB (16 instances)
#> L2 cache: 16 MiB (16 instances)
#> L3 cache: 64 MiB (2 instances)
#> NUMA node(s): 1
#> NUMA node0 CPU(s): 0-31
#> Vulnerability Gather data sampling: Not affected
#> Vulnerability Itlb multihit: Not affected
#> Vulnerability L1tf: Not affected
#> Vulnerability Mds: Not affected
#> Vulnerability Meltdown: Not affected
#> Vulnerability Mmio stale data: Not affected
#> Vulnerability Reg file data sampling: Not affected
#> Vulnerability Retbleed: Not affected
#> Vulnerability Spec rstack overflow: Not affected
#> Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl
#> Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
#> Vulnerability Spectre v2: Mitigation; Enhanced / Automatic IBRS; IBPB conditional; STIBP always-on; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
#> Vulnerability Srbds: Not affected
#> Vulnerability Tsx async abort: Not affected
Memory
#> total used free shared buff/cache available
#> Mem: 91Gi 5.4Gi 74Gi 107Mi 12Gi 86Gi
#> Swap: 31Gi 0B 31Gi
#> Total: 123Gi 5.4Gi 106Gi